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Title:
CSPs: Tree and shrub species allelic richness in the CSPs 2009-2012
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Free within projects
Usage rights:
Data on Castanopsis eyrei from "Isolation by Elevation: Genetic Structure at Neutral and Putatively Non-Neutral Loci in a Dominant Tree of Subtropical Forests, Castanopsis eyrei By: MiaoMiao SHI; Stefan G. MICHALSKI; Xiao- Yong CHEN, Walter DURKA. Data on Ardisia crenata from " Species diversity and population density affect genetic structure and gene dispersal in a subtropical understory shrub By:Zeng, XQ (Zeng, Xueqin) ; Michalski, SG (Michalski, Stefan G.); Fischer, M (Fischer, Markus); Durka, W (Durka, Walter)
Published:
No information available
Abstract:
Genetic diversity parameters have been calculated for several species using molecular markers (Micorsatellites). The aim is to identify patterns of genetic diversity and answer if those are correlated to either species diversity and/or topographic parameters. Data where taken from existing, already published and unpublished studies. Samples where collected from the CSPs in the GNNR from 2008 to 2010. Species include Castanopsis eyrei, Castanopsis fargesii, Cyclobalanopsis glauca, Ardisia crenata, Daphniphyllum oldhamii, Lithocarpus glaber, Quercus serrata, Syzygium buxifolium, Vaccinium carlesii, Schima superba and Rhododendron simsii.
Design:
Castanopsis eyrei, Castanopsis fargesii, Cyclobalanopsis glauca, Ardisia crenata, Daphniphyllum oldhamii,Lithocarpus glaber, Quercus serrata, Syzygium buxifolium, Vaccinium carlesii, Schima superba with at least 3 individuals per sampled CSP.
Spatial extent:
All 27 CSPs have been sampled with varying degrees of sampling density per species. Additionally, for Rhododendron simsii 50 individuals of a non- CSP population are available (not included in this data set)
Temporal extent:
samples have been collected between 2009 and 2012
Taxonomic extent:
individuals of 11 tree and shrub species
Measurement cirumstances:
C. eyrei, D. oldhamii, L. glaber, Q. serrata, S. superba include loci potentially under positive selection.
Data analysis:
Leaf samples have been dried for transport and genomic DNA has been extracted using QIAGEN Plant 96 Kits. Specific microsatellite markers have been either developed newly or used from published studies (see publication for details). Multiplex PCR were run on Eppendorf cyclers and PCR fragments have been detected on an ABI 3130 capillary sequencer. Fragments binning and scoring were carried out in the Genemapper Software. Loci have been checked for Nullalleles using the Microchecker software which also provided adjusted genotypes. These adjusted genotypes have been used to check for candidate loci under positive selection (loci not behaving neutrally) with the lositan detection workbench. Loci under positive selection have been removed from further analysis. GenAlEx (Genetic Analysis in Excel) software was used to compute F statistics and PCoA for individuals and CSPs. The Fstat software was finally used to calculate allelic richness for all species.

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Dataset column

Name:
CSP
Definition:
Number of the CSP
Unit:
No information available
Datagroup:
BEF research plot name
Keywords:
plot
Values:
CSP05
CSP01
CSP04
CSP02
CSP03
Contributors:
No information available

Dataset column

Name:
Ar_A.crenata
Definition:
Mean allelic richness over all loci, Ardisia crenata
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
5.966
5.353199999999999
4.973599999999999
5.185999999999999
5.6
Contributors:
No information available

Dataset column

Name:
Ar_C.eyrei
Definition:
Mean allelic richness over all loci, Castanopsis eyrei
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
5.5512500000000005
5.625
6.232
5.642
6.203874999999999
Contributors:
No information available

Dataset column

Name:
Ar_C.fargesii
Definition:
Mean allelic richness over all loci, Castanopsis fargesii
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
5.353142857142856
5.413142857142857
5
4.714285714285714
4.99
Contributors:
No information available

Dataset column

Name:
Ar_C.glauca
Definition:
Mean allelic richness over all loci, Cyclobalanopsis glauca
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
2.184
1.927857142857143
2.294714285714286
2.3201428571428573
2.4285714285714284
Contributors:
No information available

Dataset column

Name:
Ar_D.oldhamii
Definition:
Mean, allelic richness over all loci, Daphniphyllum oldhamii
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
2.9166666666666665
3.14125
2.891166666666667
3.231583333333333
3.0353333333333334
Contributors:
No information available

Dataset column

Name:
Ar_L.glaber
Definition:
Mean allelic richness over all loci, Lithocarpus glaber
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
2.74125
2.883
2.75
2.80125
2.47375
Contributors:
No information available

Dataset column

Name:
Ar_Q.serrata
Definition:
Mean allelic richness over all loci, Quercus serrata
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
3.0515999999999996
3.2
2.8
3.5886000000000005
3.1686000000000005
Contributors:
No information available

Dataset column

Name:
Ar_R.simsii
Definition:
Mean allelic richness over all loci, Rhododendron simsii
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
2
2.73325
2.53325
2.71875
2.777
Contributors:
No information available

Dataset column

Name:
Ar_S.superba
Definition:
Mean allelic richness over all loci, Schima superba
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
3.6784545454545454
3.539454545454545
3.9426363636363635
4.008272727272728
3.727272727272727
Contributors:
No information available

Dataset column

Name:
Ar_S.buxifolium
Definition:
Mean allelic richness over all loci, Syzygium buxifolium
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
5
5.8469999999999995
6.422
6.492750000000001
4.06975
Contributors:
No information available

Dataset column

Name:
Ar_V.carlesii
Definition:
Mean allelic richness over all loci, Vaccinium carlesii
Unit:
No information available
Datagroup:
Intraspecific diversity
Keywords:
allelic richness
Values:
4.827
5
5.5848
5.4104
4.9138
Contributors:
No information available

No information available


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90 hahn medium

Christoph
Hahn

Owner of:
1 Datasets

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29 durka medium

Walter
Durka

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16 Datasets

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30 michalski medium

Stefan
Michalski

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10 Datasets

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