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Title:
TSQ: Site B Light availability
Access rights:
Free within projects
Usage rights:
Free within TreeDi project
Published:
No information available
Abstract:
Hemispherical photos were taken from above and below the shrubs found in the TSQS in the BEF-China experiment. These were used to calculated the amount of light that penetrates through the tree canopy, to the understory shrubs, and then through the understory to the ground. This openness was calculated, using the WinSCANOPY software, which differentiates between sky and canopy (in the photos), and thereafter calculates the percentage of each; where the percentage of sky= openness.
Design:
Photographs were taken using a Nikon D100 camera with a fisheye lens (Nikon 10.5mm f/2.8 DX Fisheye, made in Japan). Camera setting was kept at S (automatic aperture), 250 shutter speed and lens set to manual. The camera was held horizontally with the top/flash showing North. All photos were taken above the shrub apex, and the height was measured. For shrubs that were too high, the camera was placed in the shrub centre at the heighest point within reach. Photos of the shrubs were also taken with a smartphone
Spatial extent:
BEF-China experiment, located near Xingangshang, Dexing City of Jianxi Province - Site B
Temporal extent:
No information available
Taxonomic extent:
Indirectly: Plants (Shrubs)- Distylium buxifolium (DiBu) and Viburnum setigerum (ViSe)
Measurement cirumstances:
No information available
Data analysis:
The hemispherical photos were grouped by the dates on which they were taken and then further divided into light and dark (subgroup). To analyse the Hemispherical photos, the WinSCANOPY 2009a (Regent Instruments Inc., Canada) software was used. The lens.cal was removed from the software folder (this is the software’s default camera and lens) as different models were used. In the WinSCANOPY program, new colour classes were created for each subgroup of each date folder. During this process, a diverse amount of colours from different photos in the folder were selected and defined as either ‘sky’ or ‘canopy’. The ‘Edit Classes’ tool was selected to ensure the colours were correctly defined and that the ‘Sky’ was selected for the openness calculation. For the first image, after the photo was uploaded, the analysis mode was selected and under ‘Hemisphere’ – ‘Camera and Lens’, the interactive mode was used to manually create a circular radius around the centre of the image, to ensure the top and bottom of the radius touch the top and bottom of the image respectively. For all the following images, the colour class created for the subgroup the image belongs to was loaded prior to analysis, the image was selected from the folder and finally ‘Hemisphere’ was set as ‘Duplicate Last’ to ensure the circular hemisphere for each image is identical (the same size, location and orientation). This was done individually for all images in order to ensure the openness value was realistic. If it was uncertain, the image was changed to black and white mode to better see what was classified as sky and canopy. Finally, the openness value of the output was noted with the corresponding image number (belonging to a particular shrub).

Filter:
Dataset column

Name:
Date
Definition:
The date where the photo was taken in the field
Unit:
No information available
Datagroup:
Date
Keywords:
No information available
Values:
2024-08-23
2024-08-22
2024-08-17
2024-08-16
2024-08-19
Contributors:
No information available

Dataset column

Name:
Plot
Definition:
Plot location, within the Site; Datagroup description: In the BEF-China Experiment, the sites were divided into 1mu plots, where trees and shrubs were planted in 2009. In each 1-mu plot, 400 trees were planted with a distance of 1.29m between. Shrubs were planted in 4mu Superplots, with different shrub diversity levels, in the interspaces of the trees (0.91m to the nearest tree).
Unit:
No information available
Datagroup:
Identifier
Keywords:
location
Values:
F29
F28
G28
E26
F27
Contributors:
No information available

Dataset column

Name:
Shrub coordinate
Definition:
Identification of the invidual shrubs, within the TSQS.; Datagroup description: Within the plots, Tree Species Quadrats (TSQs) were created, which consist of a focal shrub in the centre and 4 surrounding trees, one on either corner of the quadrat. However, due to the high mortality rates of several species, many of the TSQs have less than 4 surrounding trees. The shrub coordinate, which is the same as the coordinate of the nearest tree in the SW direction (T1 of the TSQ), consists of four digits, representing the x and y coordinate (or row/column of the trees in the plot)
Unit:
Four-digit coordinate
Datagroup:
Identifier
Keywords:
location
Values:
0116
0103
0009
0117
0018
Contributors:
No information available

Dataset column

Name:
Shrub species
Definition:
Distylium buxifolium (DiBu) and Viburnum setigerum (ViSe)
Unit:
No information available
Datagroup:
Plant trait
Keywords:
Trait
Values:
control
DiBu
ViSe
Contributors:
No information available

Dataset column

Name:
Above Photo ID
Definition:
The photo number/identification from the camera, for photos taken above the shrub, in order to link the photo with the shrub_id, and later to link the openness result to a shrub_id.
Unit:
No information available
Datagroup:
photo_label
Keywords:
No information available
Values:
0010
0004
0007
0013
0001
Contributors:
No information available

Dataset column

Name:
Openness Above
Definition:
Light availability measurement for photos taken above the shrub
Unit:
Percentage
Datagroup:
Environmental trait
Keywords:
Trait
Values:
11.21
11.98
100
10.10
10.90
Contributors:
No information available

Dataset column

Name:
Below Photo ID
Definition:
The photo number/identification from the camera, for photos taken below the shrub, in order to link the photo with the shrub_id, and later to link the openness result to a shrub_id.
Unit:
No information available
Datagroup:
photo_label
Keywords:
No information available
Values:
0002
0005
0011
0008
0014
Contributors:
No information available

Dataset column

Name:
Openness Below
Definition:
Light availability measurement for photos taken below the shrub
Unit:
Percentage
Datagroup:
Environmental trait
Keywords:
Trait
Values:
Sample values are not displayed because this column hasn't been approved yet.
Contributors:
No information available

Dataset column

Name:
Height (cm)
Definition:
Height at which the camera was held for the photos taken above the shrub
Unit:
cm
Datagroup:
Identifier
Keywords:
No information available
Values:
110
115
120
125
100
Contributors:
No information available

Dataset column

Name:
Phone image number
Definition:
Photo ID from the smartphone, to match the photos taken of the shrub with the shrub coordinate; Datagroup description: At each shrub/TSQ, a photo was taken using a smartphone, as a reference for what the shrub looked like. This was, however, not used in further analyses
Unit:
No information available
Datagroup:
photo_label
Keywords:
No information available
Values:
070014
065630
070348
065105
070640
Contributors:
No information available

Dataset column

Name:
Comment
Definition:
Any additional notes
Unit:
No information available
Datagroup:
Comments
Keywords:
No information available
Values:
Barely any leaves left only at top and eaten
Almost no canopy/cover
Below photo very over exposed
72306
73636
Contributors:
No information available

No information available


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Michèle
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