Title:
Phylogenetic diversity indices - Exploratory Plots based on all species in the plot
Access rights:
Free within projects
Usage rights:
No information available
Published:
No information available
Abstract:
Phylogenetic diversity indices of the Exploratory plots, calculated using the Picante R package based on all species in the plot.
PD indices:
* Faith's - total branch length of all species in the plot
* MPD - Mean pairwise distance separating all species in the plot (1. based on number of individuals and 2. weighted by relative abundance)
* MNTD - Mean nearest taxon distance for all speciesin the plot (1. based on number of individuals and 2. weighted by relative abundance)
We can also calculate the standardised effect sizes for the three indices if required.
Phylogeny and script to create PD provided by Oliver Purschke from iDiv. Please contact Sophia for access to the indices as we must acknowledge Oliver in any papers using the indicies.
Design:
No information available
Spatial extent:
All Exploratory regions
Temporal extent:
No information available
Taxonomic extent:
See attached phylogenetic tree
Measurement cirumstances:
No information available
Data analysis:
For all monocultures the indices are set to 0.
Filter:
Dataset column
Name:
Plot id
Definition:
Unique plot id
Unit:
No information available
Datagroup:
Exploratory plot id
Keywords:
No information available
Values:
| FIN05 |
| FIN03 |
| FIN02 |
| FIN04 |
| FIN01 |
Contributors:
No information available
Dataset column
Name:
Faiths_PD
Definition:
Faiths PD Total phylogenetic branch length of all species
Unit:
No information available
Datagroup:
Diversity measure
Keywords:
No information available
Values:
| 1007.333343 |
| 1003.700013 |
| 1005.160012 |
| 0 |
| 1007.333344 |
Contributors:
No information available
Dataset column
Name:
Species richness
Definition:
Species richness
Unit:
No information available
Datagroup:
Species richness
Keywords:
No information available
Values:
| 1 |
| 3 |
| 2 |
| 10 |
| 4 |
Contributors:
No information available
Dataset column
Name:
MPD_RelBA
Definition:
Mean pairwise distance separating all species - weighted by relative abundance
Unit:
No information available
Datagroup:
Diversity measure
Keywords:
No information available
Values:
| 0.367441264750655 |
| 0 |
| 102.132212376327 |
| 101.592432324147 |
| 100.036444615064 |
Contributors:
No information available
Dataset column
Name:
MPD_Num
Definition:
Mean pairwise distance separating all species - based on number of individuals
Unit:
No information available
Datagroup:
Diversity measure
Keywords:
No information available
Values:
| 0 |
| 104.468809897921 |
| 104.9012807704 |
| 105.072990676565 |
| 105.689248827172 |
Contributors:
No information available
Dataset column
Name:
MNTD_RelBA
Definition:
Mean nearest taxon distance for all species - weighted by relative abundance
Unit:
No information available
Datagroup:
Diversity measure
Keywords:
No information available
Values:
| 132.641652718828 |
| 0 |
| 11.333334 |
| 129.565361527421 |
| 127.895933179333 |
Contributors:
No information available
Dataset column
Name:
MNTD_Num
Definition:
Mean nearest taxon distance for all species - based on number of individuals
Unit:
No information available
Datagroup:
Diversity measure
Keywords:
No information available
Values:
| 102.015686568627 |
| 102.69453604918 |
| 106.867029836957 |
| 101.891147819672 |
| 0 |
Contributors:
No information available
No information available
Filter:
Attachment:
File name:
PhyloFunDiv49.pdf
Description:
Phylogeny of the Exploratory plot species (mainly based on the Daphne-tree (Durka & Michalski 2012, Ecology)).
Uri:
No information available
Is essential:
No information available
Content type:
application/pdf
File size:
5.95 KB
Created at:
2014-01-23
Updated at:
2014-01-23
No information available
No information avialable
Filter:
No information available
Filter:
No information available
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